PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_13686.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 248aa    MW: 27787.2 Da    PI: 9.3241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_13686.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-182474155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +++ GVr+++ +g+WvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Rsa1.0_13686.1_g00002.1 24 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 74
                             699*******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.98E-332484No hitNo description
PfamPF008475.0E-132474IPR001471AP2/ERF domain
SMARTSM003807.0E-392588IPR001471AP2/ERF domain
PROSITE profilePS5103219.8232582IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-192582IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-282583IPR001471AP2/ERF domain
PRINTSPR003674.0E-82637IPR001471AP2/ERF domain
PRINTSPR003674.0E-84864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDKNKTTQKQ KTKEKSKGNN NNKTKFVGVR QRPSGKWVAE IKDTTQKIRM WLGTFETAEE  60
AARAYDEAAC LLRGSNTRTN FANHFPNNSQ LSLKIRNLLH QKQSMKQQQQ PKQNKPVSSF  120
AECSINATTL TTTTTTTVMP LNNVYRPDSS SVILQPELPY TWPLVSGFNH QVPLTHVGEG  180
AHGHLNNPNS TDQHLGLADI ERQISASLYA MNGGGNGYYD NMNAEYAIFD PMDPIWDLPS  240
LSQLFCPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-152681359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891860.0AC189186.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001J13, complete sequence.
GenBankAC1894300.0AC189430.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB067F22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611989.11e-137PREDICTED: ethylene-responsive transcription factor RAP2-11-like
RefseqXP_013736368.11e-137PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotQ6J9S11e-129RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A078HBS01e-137A0A078HBS0_BRANA; BnaC09g37870D protein
TrEMBLA0A0D3EDY71e-137A0A0D3EDY7_BRAOL; Uncharacterized protein
STRINGBra002262.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-97related to AP2 11